your alignment should be unaffected if you just remove the tie rod and pull it out that way./
What you do, jack it up, take wheel off, take wheel bearing off(axle nut of course), take tie rod off , then your knuckle has a LOT of room to take out cv axle.
Remove cv axle
Put new seal in trans, put new axle in, push it in behind the knuckle, put a new wheel bearing over it, match up the splines and make sure clean, get it in, route your connector, get it all torqued(wheel bearing and cv), then put your tie rod back on. may be good idea to invest in tie rod puller so you dont brake the boot. also if you have grease fittingso n ball joint or tie rod, good time to do them.
And congrats, no alignment was affected beeause you didnt change where the tie rod turns in and out, you didnt change the knuckle to strut camber, and you didnt change anything else.